PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G20730.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 98aa    MW: 10334.6 Da    PI: 6.3325
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G20730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.78.7e-154982132
             GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32
                     C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk
  OPUNC07G20730.1 49 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRK 82
                     6668877777***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.71E-104586No hitNo description
SMARTSM004013.7E-54598IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-114883IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.5E-134982IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MMHMLVAPDG GGGGEMPPYG GAAAAAPMEQ ELELHRDNAD DGLDGHVRCL RCGISGNATP  60
HMRRGPDGPR TLCNACGIAY RKDTPVTNMH ENSFRGSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663171e-107AK066317.1 Oryza sativa Japonica Group cDNA clone:J013064I12, full insert sequence.
GenBankAK0738031e-107AK073803.1 Oryza sativa Japonica Group cDNA clone:J033068D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657954.13e-48PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0E0LNB33e-67A0A0E0LNB3_ORYPU; Uncharacterized protein
STRINGOB07G27730.19e-48(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.37e-13GATA-type zinc finger protein with TIFY domain