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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G20730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 98aa MW: 10334.6 Da PI: 6.3325 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.7 | 8.7e-15 | 49 | 82 | 1 | 32 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 C Cg + Tp++Rrgpdg++tLCnaCG+ yrk OPUNC07G20730.1 49 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRK 82 6668877777***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.71E-10 | 45 | 86 | No hit | No description |
SMART | SM00401 | 3.7E-5 | 45 | 98 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.7E-11 | 48 | 83 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 8.5E-13 | 49 | 82 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MMHMLVAPDG GGGGEMPPYG GAAAAAPMEQ ELELHRDNAD DGLDGHVRCL RCGISGNATP 60 HMRRGPDGPR TLCNACGIAY RKDTPVTNMH ENSFRGSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066317 | 1e-107 | AK066317.1 Oryza sativa Japonica Group cDNA clone:J013064I12, full insert sequence. | |||
GenBank | AK073803 | 1e-107 | AK073803.1 Oryza sativa Japonica Group cDNA clone:J033068D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657954.1 | 3e-48 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0E0LNB3 | 3e-67 | A0A0E0LNB3_ORYPU; Uncharacterized protein | ||||
STRING | OB07G27730.1 | 9e-48 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15039 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.3 | 7e-13 | GATA-type zinc finger protein with TIFY domain |